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In the early 2000s, Zero (with Donald Anderson's help) commissioned the construction of TR as part of an advanced AI network that was designed to govern the world's economic, political, legal, social, and cultural information.
Within the modified unit's inner sanctum, Old Snake and Otacon had uploaded a computer program into the restored GW and was used as a conduit into TR and the other AIs, thus shutting down the Patriots' system entirely.